IL_7O5B_028

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_028 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.1416

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

7O5B|1|A|G|663
7O5B|1|A|A|664
*
7O5B|1|A|U|760
7O5B|1|A|G|761
7O5B|1|A|A|762
7O5B|1|A|C|763

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15