IL_7O5B_034

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_034 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0967

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7O5B|1|A|C|788
7O5B|1|A|G|789
7O5B|1|A|A|790
7O5B|1|A|A|791
7O5B|1|A|C|792
*
7O5B|1|A|G|808
7O5B|1|A|G|809
7O5B|1|A|U|810
7O5B|1|A|A|811
7O5B|1|A|G|812

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain K

30S ribosomal protein S11

Chain X

Large subunit ribosomal RNA; LSU rRNA