IL_7O5B_037

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

7O5B|1|A|G|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_037 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1185

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

7O5B|1|A|G|935
7O5B|1|A|G|936
7O5B|1|A|G|937
*
7O5B|1|A|U|1399
7O5B|1|A|U|1400

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain V

mRNA