IL_7O5B_048

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_048 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.3834

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

7O5B|1|A|C|1139
7O5B|1|A|A|1140
7O5B|1|A|G|1141
7O5B|1|A|C|1142
*
7O5B|1|A|G|1151
7O5B|1|A|G|1152

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain I

30S ribosomal protein S9