IL_7O5B_052
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGAAA*UUAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_052 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.267
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7O5B|1|A|C|1268
7O5B|1|A|G|1269
7O5B|1|A|A|1270
7O5B|1|A|A|1271
7O5B|1|A|A|1272
*
7O5B|1|A|U|1281
7O5B|1|A|U|1282
7O5B|1|A|A|1283
7O5B|1|A|A|1284
7O5B|1|A|G|1285
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain S
- 30S ribosomal protein S19
Coloring options: