IL_7O5B_059

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_059 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1279

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7O5B|1|A|A|1425
7O5B|1|A|G|1426
7O5B|1|A|A|1427
7O5B|1|A|G|1428
*
7O5B|1|A|U|1491
7O5B|1|A|G|1492
7O5B|1|A|A|1493
7O5B|1|A|U|1494

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA