IL_7O5B_065

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_065 not in the Motif Atlas

Homologous match to IL_5IBB_340

Geometric discrepancy: 0.5745

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7O5B|1|U|G|51
7O5B|1|U|G|52
7O5B|1|U|G|53
*
7O5B|1|U|C|62
7O5B|1|U|C|63

Current chains

Chain U

tRNA

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain j

50S ribosomal protein L16

Chain u

50S ribosomal protein L27