IL_7O5B_086
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_086 not in the Motif Atlas
- Homologous match to IL_4WF9_001
- Geometric discrepancy: 0.1077
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
7O5B|1|X|G|24
7O5B|1|X|U|25
7O5B|1|X|G|26
7O5B|1|X|G|27
7O5B|1|X|A|28
7O5B|1|X|U|29
7O5B|1|X|G|30
*
7O5B|1|X|C|556
7O5B|1|X|U|557
7O5B|1|X|G|558
7O5B|1|X|A|559
7O5B|1|X|A|560
7O5B|1|X|A|561
7O5B|1|X|C|562
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
Coloring options: