IL_7O5B_089

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

7O5B|1|X|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_089 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1589

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

7O5B|1|X|G|81
7O5B|1|X|G|82
7O5B|1|X|G|83
7O5B|1|X|A|84
7O5B|1|X|G|85
*
7O5B|1|X|C|97
7O5B|1|X|U|98
7O5B|1|X|U|99
7O5B|1|X|U|100
7O5B|1|X|G|101
7O5B|1|X|A|102
7O5B|1|X|U|103
7O5B|1|X|C|104

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain t

50S ribosomal protein L24

Chain w

50S ribosomal protein L29