IL_7O5B_090

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7O5B|1|X|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_090 not in the Motif Atlas

Homologous match to IL_4WF9_006

Geometric discrepancy: 0.2802

The information below is about IL_4WF9_006

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

7O5B|1|X|C|152
7O5B|1|X|C|153
*
7O5B|1|X|G|175
7O5B|1|X|A|176
7O5B|1|X|G|177

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains