IL_7O5B_093

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_093 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.089

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7O5B|1|X|C|241
7O5B|1|X|U|242
7O5B|1|X|G|243
7O5B|1|X|A|244
7O5B|1|X|G|245
7O5B|1|X|U|246
7O5B|1|X|A|247
7O5B|1|X|G|248
*
7O5B|1|X|C|256
7O5B|1|X|G|257
7O5B|1|X|A|258
7O5B|1|X|A|259
7O5B|1|X|A|260
7O5B|1|X|C|261
7O5B|1|X|G|262

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 3

50S ribosomal protein L35

Chain i

50S ribosomal protein L15