IL_7O5B_099

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_099 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1313

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

7O5B|1|X|C|608
7O5B|1|X|C|609
7O5B|1|X|U|610
*
7O5B|1|X|A|619
7O5B|1|X|U|620
7O5B|1|X|G|621

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain i

50S ribosomal protein L15

Chain n

50S ribosomal protein L20

Chain o

50S ribosomal protein L21