IL_7O5B_100

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_100 not in the Motif Atlas

Homologous match to IL_4WF9_018

Geometric discrepancy: 0.3314

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

7O5B|1|X|C|639
7O5B|1|X|U|640
7O5B|1|X|C|641
*
7O5B|1|X|G|707
7O5B|1|X|U|708
7O5B|1|X|G|709

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 3

50S ribosomal protein L35

Chain b

50S ribosomal protein L4

Chain i

50S ribosomal protein L15