IL_7O5B_101

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_101 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1399

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7O5B|1|X|U|650
7O5B|1|X|U|651
7O5B|1|X|A|652
7O5B|1|X|A|653
7O5B|1|X|G|654
*
7O5B|1|X|C|664
7O5B|1|X|G|665
7O5B|1|X|G|666
7O5B|1|X|A|667
7O5B|1|X|G|668

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain b

50S ribosomal protein L4

Chain i

50S ribosomal protein L15