IL_7O5B_104

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

7O5B|1|X|G|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_104 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1022

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

7O5B|1|X|G|749
7O5B|1|X|U|750
*
7O5B|1|X|G|775
7O5B|1|X|G|776
7O5B|1|X|C|777

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain Z

50S ribosomal protein L2