IL_7O5B_111
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_111 not in the Motif Atlas
- Homologous match to IL_4WF9_031
- Geometric discrepancy: 0.0991
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O5B|1|X|G|903
7O5B|1|X|A|904
7O5B|1|X|G|905
7O5B|1|X|G|906
7O5B|1|X|U|907
7O5B|1|X|A|908
7O5B|1|X|G|909
*
7O5B|1|X|C|962
7O5B|1|X|G|963
7O5B|1|X|A|964
7O5B|1|X|A|965
7O5B|1|X|U|966
7O5B|1|X|G|967
7O5B|1|X|C|968
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain Y
- 5S ribosomal RNA; 5S rRNA
- Chain j
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L30
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