IL_7O5B_113

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_113 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1321

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

7O5B|1|X|G|911
7O5B|1|X|C|912
7O5B|1|X|A|913
7O5B|1|X|C|914
7O5B|1|X|U|915
*
7O5B|1|X|A|956
7O5B|1|X|A|957
7O5B|1|X|A|958
7O5B|1|X|C|959

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain Y

5S ribosomal RNA; 5S rRNA

Chain j

50S ribosomal protein L16