IL_7O5B_114

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACUAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_114 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3715

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7O5B|1|X|A|922
7O5B|1|X|C|923
7O5B|1|X|U|924
7O5B|1|X|A|925
7O5B|1|X|G|926
*
7O5B|1|X|C|945
7O5B|1|X|G|946
7O5B|1|X|A|947
7O5B|1|X|A|948
7O5B|1|X|U|949

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain j

50S ribosomal protein L16