IL_7O5B_118

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

7O5B|1|X|C|1041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_118 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.2065

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

7O5B|1|X|C|1040
7O5B|1|X|C|1041
7O5B|1|X|A|1042
*
7O5B|1|X|U|1205
7O5B|1|X|G|1206

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain e

50S ribosomal protein L13

Chain n

50S ribosomal protein L20

Chain o

50S ribosomal protein L21

Chain x

50S ribosomal protein L30