IL_7O5B_121

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

7O5B|1|X|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_121 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.122

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7O5B|1|X|G|1057
7O5B|1|X|U|1058
7O5B|1|X|A|1059
*
7O5B|1|X|U|1195
7O5B|1|X|C|1196

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain e

50S ribosomal protein L13

Chain n

50S ribosomal protein L20