IL_7O5B_122

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7O5B|1|X|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_122 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.2309

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7O5B|1|X|U|1064
7O5B|1|X|U|1065
7O5B|1|X|A|1066
7O5B|1|X|A|1067
7O5B|1|X|G|1068
7O5B|1|X|U|1069
7O5B|1|X|G|1070
*
7O5B|1|X|C|1186
7O5B|1|X|U|1187
7O5B|1|X|A|1188
7O5B|1|X|A|1189
7O5B|1|X|A|1190

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

50S ribosomal protein L6

Chain e

50S ribosomal protein L13