IL_7O5B_123
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 7O5B|1|X|A|1173, 7O5B|1|X|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_123 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1009
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|X|G|1070
7O5B|1|X|G|1071
7O5B|1|X|A|1072
7O5B|1|X|A|1073
7O5B|1|X|A|1074
7O5B|1|X|A|1075
7O5B|1|X|G|1076
*
7O5B|1|X|C|1170
7O5B|1|X|G|1171
7O5B|1|X|A|1172
7O5B|1|X|A|1173
7O5B|1|X|A|1174
7O5B|1|X|A|1175
7O5B|1|X|U|1176
7O5B|1|X|G|1177
7O5B|1|X|U|1178
7O5B|1|X|A|1179
7O5B|1|X|C|1180
7O5B|1|X|C|1181
7O5B|1|X|G|1182
7O5B|1|X|G|1183
7O5B|1|X|G|1184
7O5B|1|X|G|1185
7O5B|1|X|C|1186
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain Y
- 5S ribosomal RNA; 5S rRNA
- Chain a
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L13
- Chain j
- 50S ribosomal protein L16
Coloring options: