IL_7O5B_130

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

7O5B|1|X|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_130 not in the Motif Atlas

Homologous match to IL_7A0S_044

Geometric discrepancy: 0.2026

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7O5B|1|X|G|1259
7O5B|1|X|A|1260
7O5B|1|X|C|1261
*
7O5B|1|X|G|1268
7O5B|1|X|A|1269
7O5B|1|X|C|1270

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain n

50S ribosomal protein L20

Chain o

50S ribosomal protein L21