IL_7O5B_131

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_131 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.102

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7O5B|1|X|A|1302
7O5B|1|X|U|1303
7O5B|1|X|G|1304
7O5B|1|X|A|1305
7O5B|1|X|G|1306
7O5B|1|X|U|1307
7O5B|1|X|A|1308
7O5B|1|X|G|1309
*
7O5B|1|X|U|2040
7O5B|1|X|G|2041
7O5B|1|X|A|2042
7O5B|1|X|A|2043
7O5B|1|X|A|2044
7O5B|1|X|U|2045
7O5B|1|X|U|2046

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain b

50S ribosomal protein L4

Chain r

50S ribosomal protein L22