IL_7O5B_133
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGAAG*CGC
- Length
- 8 nucleotides
- Bulged bases
- 7O5B|1|X|G|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_133 not in the Motif Atlas
- Homologous match to IL_4WF9_050
- Geometric discrepancy: 0.1749
- The information below is about IL_4WF9_050
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
7O5B|1|X|G|1358
7O5B|1|X|G|1359
7O5B|1|X|A|1360
7O5B|1|X|A|1361
7O5B|1|X|G|1362
*
7O5B|1|X|C|1370
7O5B|1|X|G|1371
7O5B|1|X|C|1372
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain h
- MifM-stalling construct
- Chain r
- 50S ribosomal protein L22
- Chain s
- 50S ribosomal protein L23
Coloring options: