IL_7O5B_151

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

7O5B|1|X|G|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_151 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.1538

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7O5B|1|X|A|1714
7O5B|1|X|C|1715
7O5B|1|X|U|1716
7O5B|1|X|C|1717
7O5B|1|X|G|1718
7O5B|1|X|G|1719
*
7O5B|1|X|C|2019
7O5B|1|X|U|2020
7O5B|1|X|G|2021
7O5B|1|X|U|2022

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain a

50S ribosomal protein L3

Chain f

50S ribosomal protein L14