IL_7O5B_152

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7O5B|1|X|G|1744

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_152 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1182

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7O5B|1|X|C|1731
7O5B|1|X|G|1732
7O5B|1|X|U|1733
7O5B|1|X|A|1734
7O5B|1|X|A|1735
7O5B|1|X|C|1736
*
7O5B|1|X|G|1741
7O5B|1|X|G|1742
7O5B|1|X|A|1743
7O5B|1|X|G|1744
7O5B|1|X|A|1745
7O5B|1|X|A|1746
7O5B|1|X|G|1747

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

50S ribosomal protein L2