IL_7O5B_153

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

7O5B|1|X|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_153 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3646

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|U|1756
7O5B|1|X|G|1757
7O5B|1|X|U|1758
7O5B|1|X|U|1759
7O5B|1|X|A|1760
7O5B|1|X|G|1761
*
7O5B|1|X|C|1772
7O5B|1|X|G|1773
7O5B|1|X|A|1774
7O5B|1|X|G|1775
7O5B|1|X|A|1776

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA