IL_7O5B_155

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

7O5B|1|X|G|1830, 7O5B|1|X|A|1845, 7O5B|1|X|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_155 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1323

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7O5B|1|X|U|1827
7O5B|1|X|G|1828
7O5B|1|X|C|1829
7O5B|1|X|G|1830
7O5B|1|X|A|1831
7O5B|1|X|A|1832
7O5B|1|X|G|1833
*
7O5B|1|X|C|1842
7O5B|1|X|G|1843
7O5B|1|X|A|1844
7O5B|1|X|A|1845
7O5B|1|X|G|1846
7O5B|1|X|U|1847
7O5B|1|X|A|1848
7O5B|1|X|U|1849
7O5B|1|X|A|1850

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

50S ribosomal protein L2