IL_7O5B_158
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GAAG*CC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_158 not in the Motif Atlas
- Homologous match to IL_5J7L_316
- Geometric discrepancy: 0.2539
- The information below is about IL_5J7L_316
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
7O5B|1|X|G|1875
7O5B|1|X|A|1876
7O5B|1|X|A|1877
7O5B|1|X|G|1878
*
7O5B|1|X|C|1922
7O5B|1|X|C|1923
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: