IL_7O5B_179

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_179 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1226

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7O5B|1|X|A|2488
7O5B|1|X|U|2489
7O5B|1|X|C|2490
*
7O5B|1|X|G|2518
7O5B|1|X|G|2519
7O5B|1|X|U|2520
7O5B|1|X|U|2521
7O5B|1|X|U|2522

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain j

50S ribosomal protein L16

Chain u

50S ribosomal protein L27