IL_7O5B_190

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UU*AUCG

Length

6 nucleotides

Bulged bases

7O5B|1|X|U|2741, 7O5B|1|X|C|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_190 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.0998

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

7O5B|1|X|U|2724
7O5B|1|X|U|2725
*
7O5B|1|X|A|2740
7O5B|1|X|U|2741
7O5B|1|X|C|2742
7O5B|1|X|G|2743

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain k

50S ribosomal protein L17

Chain m

50S ribosomal protein L19