IL_7O5B_191

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

7O5B|1|X|A|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_191 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1196

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7O5B|1|X|G|2766
7O5B|1|X|A|2767
7O5B|1|X|U|2768
7O5B|1|X|A|2769
7O5B|1|X|A|2770
7O5B|1|X|G|2771
*
7O5B|1|X|U|2791
7O5B|1|X|G|2792
7O5B|1|X|A|2793
7O5B|1|X|A|2794
7O5B|1|X|G|2795
7O5B|1|X|C|2796

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

50S ribosomal protein L6

Chain e

50S ribosomal protein L13