IL_7O5B_192

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UAGG*UACUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_192 not in the Motif Atlas

Geometric match to IL_4WF9_085

Geometric discrepancy: 0.3406

The information below is about IL_4WF9_085

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7O5B|1|X|U|2861
7O5B|1|X|A|2862
7O5B|1|X|G|2863
7O5B|1|X|G|2864
*
7O5B|1|X|U|2903
7O5B|1|X|A|2904
7O5B|1|X|C|2905
7O5B|1|X|U|2906
7O5B|1|X|A|2907

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain a

50S ribosomal protein L3

Chain k

50S ribosomal protein L17