IL_7O5B_196
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGUCACA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_196 not in the Motif Atlas
- Geometric match to IL_9E6Q_106
- Geometric discrepancy: 0.248
- The information below is about IL_9E6Q_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O5B|1|Y|G|21
7O5B|1|Y|G|22
7O5B|1|Y|U|23
7O5B|1|Y|C|24
7O5B|1|Y|A|25
7O5B|1|Y|C|26
7O5B|1|Y|A|27
*
7O5B|1|Y|U|53
7O5B|1|Y|U|54
7O5B|1|Y|A|55
7O5B|1|Y|A|56
7O5B|1|Y|G|57
7O5B|1|Y|C|58
Current chains
- Chain Y
- 5S rRNA (112-MER)
Nearby chains
- Chain c
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L18
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