3D structure

PDB id
7O5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
Experimental method
ELECTRON MICROSCOPY
Resolution
3.33 Å

Loop

Sequence
CGAAAC*GUUAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O5B|1|A|C|1268
7O5B|1|A|G|1269
7O5B|1|A|A|1270
7O5B|1|A|A|1271
7O5B|1|A|A|1272
7O5B|1|A|C|1273
*
7O5B|1|A|G|1280
7O5B|1|A|U|1281
7O5B|1|A|U|1282
7O5B|1|A|A|1283
7O5B|1|A|A|1284
7O5B|1|A|G|1285

Current chains

Chain A
16S rRNA (1533-MER)

Nearby chains

Chain C
30S ribosomal protein S3
Chain S
30S ribosomal protein S19

Coloring options:

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