IL_7O5B_207

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAAC*GGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_207 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2334

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7O5B|1|A|G|1432
7O5B|1|A|U|1433
7O5B|1|A|A|1434
7O5B|1|A|A|1435
7O5B|1|A|C|1436
*
7O5B|1|A|G|1483
7O5B|1|A|G|1484
7O5B|1|A|G|1485
7O5B|1|A|A|1486
7O5B|1|A|C|1487

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain f

50S ribosomal protein L14