IL_7O5B_209

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGUUCGUUUAC*GUAGCGAAUC

Length

21 nucleotides

Bulged bases

7O5B|1|W|U|79, 7O5B|1|W|U|82, 7O5B|1|W|U|83, 7O5B|1|W|A|249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|W|G|76
7O5B|1|W|G|77
7O5B|1|W|U|78
7O5B|1|W|U|79
7O5B|1|W|C|80
7O5B|1|W|G|81
7O5B|1|W|U|82
7O5B|1|W|U|83
7O5B|1|W|U|84
7O5B|1|W|A|85
7O5B|1|W|C|86
*
7O5B|1|W|G|243
7O5B|1|W|U|244
7O5B|1|W|A|245
7O5B|1|W|G|246
7O5B|1|W|C|247
7O5B|1|W|G|248
7O5B|1|W|A|249
7O5B|1|W|A|250
7O5B|1|W|U|251
7O5B|1|W|C|252

Current chains

Chain W

SRP RNA (266-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA