IL_7O5B_212

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAACCAUGUCAGGUC*GAAGCAGCAUUAAG

Length

30 nucleotides

Bulged bases

7O5B|1|W|A|148, 7O5B|1|W|A|149, 7O5B|1|W|G|171

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|W|U|146
7O5B|1|W|G|147
7O5B|1|W|A|148
7O5B|1|W|A|149
7O5B|1|W|C|150
7O5B|1|W|C|151
7O5B|1|W|A|152
7O5B|1|W|U|153
7O5B|1|W|G|154
7O5B|1|W|U|155
7O5B|1|W|C|156
7O5B|1|W|A|157
7O5B|1|W|G|158
7O5B|1|W|G|159
7O5B|1|W|U|160
7O5B|1|W|C|161
*
7O5B|1|W|G|168
7O5B|1|W|A|169
7O5B|1|W|A|170
7O5B|1|W|G|171
7O5B|1|W|C|172
7O5B|1|W|A|173
7O5B|1|W|G|174
7O5B|1|W|C|175
7O5B|1|W|A|176
7O5B|1|W|U|177
7O5B|1|W|U|178
7O5B|1|W|A|179
7O5B|1|W|A|180
7O5B|1|W|G|181

Current chains

Chain W

SRP RNA (266-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain g

Signal recognition particle protein