IL_7O5B_222

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGCUUGUACAGGAUAGGUAGGAGC*GCAUCGGUGGGAUACUACCCUGGCU

Length

49 nucleotides

Bulged bases

7O5B|1|X|U|2138, 7O5B|1|X|U|2140, 7O5B|1|X|A|2141, 7O5B|1|X|C|2142, 7O5B|1|X|G|2145, 7O5B|1|X|U|2147, 7O5B|1|X|G|2156, 7O5B|1|X|C|2190, 7O5B|1|X|A|2191, 7O5B|1|X|U|2192, 7O5B|1|X|G|2194, 7O5B|1|X|G|2199, 7O5B|1|X|U|2201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|X|A|2134
7O5B|1|X|G|2135
7O5B|1|X|C|2136
7O5B|1|X|U|2137
7O5B|1|X|U|2138
7O5B|1|X|G|2139
7O5B|1|X|U|2140
7O5B|1|X|A|2141
7O5B|1|X|C|2142
7O5B|1|X|A|2143
7O5B|1|X|G|2144
7O5B|1|X|G|2145
7O5B|1|X|A|2146
7O5B|1|X|U|2147
7O5B|1|X|A|2148
7O5B|1|X|G|2149
7O5B|1|X|G|2150
7O5B|1|X|U|2151
7O5B|1|X|A|2152
7O5B|1|X|G|2153
7O5B|1|X|G|2154
7O5B|1|X|A|2155
7O5B|1|X|G|2156
7O5B|1|X|C|2157
*
7O5B|1|X|G|2189
7O5B|1|X|C|2190
7O5B|1|X|A|2191
7O5B|1|X|U|2192
7O5B|1|X|C|2193
7O5B|1|X|G|2194
7O5B|1|X|G|2195
7O5B|1|X|U|2196
7O5B|1|X|G|2197
7O5B|1|X|G|2198
7O5B|1|X|G|2199
7O5B|1|X|A|2200
7O5B|1|X|U|2201
7O5B|1|X|A|2202
7O5B|1|X|C|2203
7O5B|1|X|U|2204
7O5B|1|X|A|2205
7O5B|1|X|C|2206
7O5B|1|X|C|2207
7O5B|1|X|C|2208
7O5B|1|X|U|2209
7O5B|1|X|G|2210
7O5B|1|X|G|2211
7O5B|1|X|C|2212
7O5B|1|X|U|2213

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains