IL_7O5H_020

3D structure

PDB id

7O5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal methyltransferase KsgA bound to small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5H_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1102

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7O5H|1|A|U|409
7O5H|1|A|G|410
7O5H|1|A|A|411
7O5H|1|A|A|412
7O5H|1|A|G|413
7O5H|1|A|A|414
7O5H|1|A|A|415
7O5H|1|A|G|416
*
7O5H|1|A|U|427
7O5H|1|A|G|428
7O5H|1|A|U|429
7O5H|1|A|A|430
7O5H|1|A|A|431
7O5H|1|A|A|432
7O5H|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4