IL_7O5H_038
3D structure
- PDB id
- 7O5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosomal methyltransferase KsgA bound to small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5H_038 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.0891
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7O5H|1|A|A|673
7O5H|1|A|G|674
7O5H|1|A|A|675
7O5H|1|A|A|676
7O5H|1|A|U|677
*
7O5H|1|A|G|713
7O5H|1|A|G|714
7O5H|1|A|A|715
7O5H|1|A|A|716
7O5H|1|A|U|717
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6, fully modified isoform
- Chain K
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18
- Chain U
- 30S ribosomal protein S21
Coloring options: