IL_7O7Y_016

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_016 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3711

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7O7Y|1|A2|C|188
7O7Y|1|A2|U|189
7O7Y|1|A2|G|190
7O7Y|1|A2|A|191
7O7Y|1|A2|C|192
*
7O7Y|1|A2|G|207
7O7Y|1|A2|G|208
7O7Y|1|A2|A|209
7O7Y|1|A2|PSU|210
7O7Y|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8