IL_7O7Y_078

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAA*U(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_078 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3663

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7O7Y|1|A2|U|1401
7O7Y|1|A2|A|1402
7O7Y|1|A2|A|1403
*
7O7Y|1|A2|U|1445
7O7Y|1|A2|PSU|1446
7O7Y|1|A2|A|1447

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ap

uS9

Chain At

40S ribosomal protein uS10