IL_7O7Y_120

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

7O7Y|1|B5|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_120 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3826

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7O7Y|1|B5|G|443
7O7Y|1|B5|G|444
7O7Y|1|B5|U|445
7O7Y|1|B5|C|446
*
7O7Y|1|B5|G|1244
7O7Y|1|B5|C|1245
7O7Y|1|B5|U|1246
7O7Y|1|B5|A|1247
7O7Y|1|B5|C|1248

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Be

eL32

Chain Bf

eL33