IL_7O7Y_136

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

7O7Y|1|B5|G|723, 7O7Y|1|B5|G|724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_136 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0564

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7O7Y|1|B5|C|721
7O7Y|1|B5|U|722
7O7Y|1|B5|G|723
7O7Y|1|B5|G|724
7O7Y|1|B5|G|725
*
7O7Y|1|B5|C|838
7O7Y|1|B5|G|839

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein eL20