IL_7O7Y_140

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACGCC*GCGCGACCCC

Length

16 nucleotides

Bulged bases

7O7Y|1|B5|C|791, 7O7Y|1|B5|C|797

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Y|1|B5|G|756
7O7Y|1|B5|A|757
7O7Y|1|B5|C|758
7O7Y|1|B5|G|759
7O7Y|1|B5|C|760
7O7Y|1|B5|C|761
*
7O7Y|1|B5|G|790
7O7Y|1|B5|C|791
7O7Y|1|B5|G|792
7O7Y|1|B5|C|793
7O7Y|1|B5|G|794
7O7Y|1|B5|A|795
7O7Y|1|B5|C|796
7O7Y|1|B5|C|797
7O7Y|1|B5|C|798
7O7Y|1|B5|C|799

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9