IL_7O7Y_153

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

7O7Y|1|B5|C|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_153 not in the Motif Atlas

Geometric match to IL_6ZDP_001

Geometric discrepancy: 0.3855

The information below is about IL_6ZDP_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7O7Y|1|B5|G|1390
7O7Y|1|B5|C|1391
7O7Y|1|B5|C|1392
*
7O7Y|1|B5|G|1403
7O7Y|1|B5|C|1404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Ribosomal Protein uL30

Chain BQ

Ribosomal Protein eL18

Chain Bb

60S ribosomal protein L29