IL_7O7Y_178

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

7O7Y|1|B5|C|1860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_178 not in the Motif Atlas

Homologous match to IL_8GLP_078

Geometric discrepancy: 0.0753

The information below is about IL_8GLP_078

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

7O7Y|1|B5|C|1859
7O7Y|1|B5|C|1860
7O7Y|1|B5|G|1861
*
7O7Y|1|B5|C|2001
7O7Y|1|B5|G|2002

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BF

Ribosomal Protein uL30

Chain BM

Ribosomal protein L14

Chain BO

Ribosomal protein uL13

Chain BS

Ribosomal protein eL20

Chain Bf

eL33