IL_7O7Y_254

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

7O7Y|1|B5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_254 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3794

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7O7Y|1|B5|U|4214
7O7Y|1|B5|U|4215
7O7Y|1|B5|G|4216
*
7O7Y|1|B5|C|4231
7O7Y|1|B5|C|4232
7O7Y|1|B5|A|4233
7O7Y|1|B5|A|4234
7O7Y|1|B5|G|4235

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein uL13

Chain Bm

60S ribosomal protein L40